In this post, we will see how to resolve Can convert Granges to data.frame Question: I have follow data: I try to convert it to data.frame, but I see some error I dont know why Best Answer: The problem is ...

In this post, we will see how to resolve Pasting multiple (unknown maximum) columns together past the 2nd column in R Question: I have a data set that is a GMT file: There are three columns, the pathway, the source ...

In this post, we will see how to resolve How to rename chromosome_position column in a Beagle file and match it with the index fai? Question: I have text files (tab separated) which have different columns. I need to rename ...

In this post, we will see how to resolve Removing characters from a list of strings if they don’t follow a list Question: I have a python code and I’m working with a list of sequences so this works so ...

In this post, we will see how to resolve Removing lines depending upon keyword occurance Question: I have 7,000 files(sade1.pdbqt … sade7200.pdbqt). Only some of the files contains second and so occurrence of a keyword TORSDOF. For a given file, ...

In this post, we will see how to resolve create a list inside nested dictionary Question: I have a long list of keys (main keys) in the nested dictionary. In one of the sub-keys, I want to create a list ...

Question: I’m trying to submit my first array job to SLURM and I don’t understand its behaviour. I have 240 files like this: And I’m trying to get SLURM to do an array run for me with 50 files running ...

Question: In my snakemake pipeline, I have an ‘all’ rule, which located at the very bottom of the DAG of jobs. It’s essentially the entry point for snakemake, but it doesn’t do anything other than list all of the desired ...

Question: I am trying to reformat the reference legend files to make them compatible with bcftools. Essentially, I need to go from this: to this: ideally using bash. Answer: If sed is an option: (This command s/:/_/2 is substituting the ...

Question: I am trying to write a code to compare some covid samples but I am getting a syntax error on: print('Total proteins:', len(df))def conv(item): I tried to add “()” and change some def in the code but I keeps ...